JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF14_chr1_13336892_13352134	0/0	a0008	474	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0009	474	1	0	1	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0010	474	1	0	0	0	0	1	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0011	474	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF15_chr1_13310581_13327598	1/1	a0001	478	270	61	58	109	11	29	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0002	478	5	0	3	0	1	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0003	478	5	5	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0004	478	5	5	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0005	478	2	0	0	1	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0006	478	2	0	0	2	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0007	478	2	2	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0008	478	1	0	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0009	478	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0010	478	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0011	478	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0012	478	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0013	478	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0014	478	1	0	0	0	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0015	478	1	0	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0016	478	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0017	478	1	0	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	a0018	476	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF17_chr1_13384632_13397629	1/1	a0001	474	327	71	61	146	15	32	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0002	474	25	1	3	18	1	2	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0003	474	21	6	6	7	1	1	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0004	474	18	14	1	1	0	2	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0005	474	9	0	0	9	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0006	474	6	0	0	0	0	6	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0007	474	6	4	1	0	1	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0008	474	2	0	0	2	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0009	474	2	0	0	1	0	1	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0010	474	1	0	1	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0011	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0012	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0013	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0014	314	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0015	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0016	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0017	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0018	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0019	474	1	0	1	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0020	474	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0021	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0022	474	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	a0023	474	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF18_chr1_13217695_13231154	0/1	a0001	479	204	44	37	90	7	25	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0002	479	18	1	2	14	0	1	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0003	479	16	2	0	12	0	2	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0004	479	4	3	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0005	479	3	3	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154