JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF18_chr1_13217695_13231154	0/0	a0006	479	3	0	0	3	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0007	479	2	0	2	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0008	479	2	2	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0009	479	2	0	0	2	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0010	479	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0011	479	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0012	479	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0013	479	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0014	479	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0015	479	1	0	0	0	1	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0016	479	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0017	479	1	0	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0018	479	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0019	479	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	a0020	479	1	0	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF19_chr1_13363431_13376947	0/1	a0001	479	290	73	53	111	16	36	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	1/0	a0002	479	70	7	12	43	1	6	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0003	479	57	0	0	53	0	4	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0004	479	6	4	2	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0005	479	6	1	1	0	1	3	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0006	479	4	4	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0007	479	3	3	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0008	479	3	0	0	3	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0009	479	2	2	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0010	479	1	0	0	0	0	1	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0011	479	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0012	479	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0013	479	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0014	479	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0015	479	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0016	479	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0017	479	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	a0018	479	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF1_chr1_12786397_12801628	1/0	a0001	474	174	61	45	48	6	13	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0002	474	117	17	18	71	1	10	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/1	a0003	474	53	3	9	30	2	8	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0004	474	7	0	5	0	1	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0005	474	5	0	0	5	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0006	474	4	0	0	0	0	4	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0007	474	3	0	0	0	0	3	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0008	474	3	2	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0009	474	3	0	0	3	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0010	474	2	2	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0011	474	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0012	474	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0013	169	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0014	474	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0015	474	1	0	0	0	0	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0016	474	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0017	474	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628