JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF26_chr1_13143907_13161009	0/0	a0011	478	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0012	478	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0013	478	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0014	478	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0015	478	1	0	0	0	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0016	478	1	0	0	1	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0017	478	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF27_chr1_13044476_13061575	0/0	a0001	478	103	2	35	59	6	1	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0002	478	3	0	0	3	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0003	478	3	0	0	3	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0004	478	3	0	1	0	2	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0005	478	2	0	2	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0006	478	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0007	478	1	0	0	0	0	1	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0008	478	1	0	0	1	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	a0009	478	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF2_chr1_12852086_12866909	1/1	a0001	474	232	48	41	110	7	24	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0002	210	27	0	1	23	1	2	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0003	474	23	6	7	7	1	2	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0004	474	14	1	4	4	1	4	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0005	474	12	12	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0006	474	6	6	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0007	474	4	0	4	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0008	474	4	0	1	0	2	1	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0009	474	3	0	3	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0010	474	3	3	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0011	474	2	1	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0012	474	2	0	0	2	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0013	474	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0014	49	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0015	474	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0016	474	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0017	474	1	0	0	0	0	1	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	a0018	474	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF33_chr1_13298539_13313907	0/0	a0001	252	207	19	32	119	7	30	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/1	a0002	474	43	5	11	21	1	4	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0003	252	35	2	15	6	6	6	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0004	474	16	0	4	12	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0005	474	12	0	0	12	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0006	474	11	0	0	11	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0007	474	9	7	2	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0008	474	8	0	0	8	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0009	474	8	1	2	5	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0010	474	7	7	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0011	474	6	6	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0012	474	4	4	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0013	474	3	3	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0014	474	3	3	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0015	133	2	1	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0016	474	2	0	1	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907