JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF33_chr1_13298539_13313907	0/0	a0017	474	2	2	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0018	474	2	2	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0019	474	2	2	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0020	474	2	2	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0021	474	2	0	0	2	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0022	252	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0023	252	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0024	252	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0025	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0026	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0027	474	1	0	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0028	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0029	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0030	474	1	0	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0031	474	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0032	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0033	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0034	474	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0035	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0036	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0037	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0038	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0039	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0040	314	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0041	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0042	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0043	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0044	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0045	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0046	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0047	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0048	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0049	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0050	474	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0051	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	a0052	474	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF4_chr1_12874212_12891201	0/0	a0000	0	6	5	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/1	a0001	478	161	33	27	78	6	16	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	1/0	a0002	478	52	2	17	23	3	6	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0003	344	17	2	7	6	1	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0004	478	17	2	2	7	2	4	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0005	424	14	1	3	6	1	3	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0006	478	7	0	0	6	1	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0007	478	5	5	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0008	478	5	5	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0009	478	4	0	0	4	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0010	290	3	0	0	2	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0011	424	3	0	2	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0012	478	3	3	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0013	290	2	2	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201