JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF4_chr1_12874212_12891201	0/0	a0014	478	2	0	0	0	2	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0015	478	2	0	0	2	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0016	478	2	0	0	2	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0017	478	2	0	1	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0018	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0019	478	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0020	290	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0021	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0022	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0023	478	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0024	352	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0025	478	1	0	0	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0026	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0027	478	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0028	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0029	478	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0030	478	1	0	0	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0031	478	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0032	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0033	478	1	0	1	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	a0034	478	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF5_chr1_13249198_13268435	0/0	a0001	476	36	5	7	18	2	4	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0002	476	32	2	11	15	1	3	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0003	476	20	0	2	16	0	2	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0004	476	10	2	0	8	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0005	476	9	1	2	4	1	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0006	476	6	0	2	4	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0007	476	4	0	0	4	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0008	476	4	0	0	4	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0009	476	4	1	0	2	0	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0010	476	4	0	0	3	0	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0011	476	3	0	0	0	1	2	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0012	476	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0013	476	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0014	476	1	0	1	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0015	476	1	0	1	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0016	476	1	0	0	0	1	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0017	476	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0018	476	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0019	476	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0020	427	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	a0021	476	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF6_chr1_12933472_12952580	0/0	a0001	476	31	3	7	17	1	3	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0002	476	28	2	8	17	0	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0003	476	5	0	2	1	1	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0004	476	4	0	2	2	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0005	476	4	0	0	4	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0006	476	3	1	2	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0007	476	3	3	0	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0008	476	2	0	1	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580