Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCG8_chr2_43833971_43887988	0/0	a0010	673	3	0	2	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0011	673	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0012	673	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0013	673	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0014	673	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0015	673	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0016	673	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0017	673	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0018	673	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	1/1	a0001	306	410	93	66	190	12	47	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	a0002	306	9	0	4	0	4	1	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	a0003	306	3	0	3	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	a0004	306	1	1	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	a0005	306	1	0	1	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD11_chr7_73731094_73743802	1/1	a0001	306	409	80	78	191	18	40	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	a0002	306	17	16	1	0	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	a0003	306	1	0	0	1	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	a0004	306	1	0	1	0	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD12B_chr14_50867053_50909970	1/1	a0001	362	187	40	37	77	9	22	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0002	362	116	19	14	71	3	9	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0003	362	36	10	6	11	0	9	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0004	362	18	16	2	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0005	362	13	2	7	4	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0006	362	2	0	2	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0007	362	1	0	0	0	1	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0008	362	1	0	0	0	1	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0009	362	1	1	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	a0010	362	1	0	0	1	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	1/1	a0001	398	311	89	70	100	12	38	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	a0002	398	2	1	1	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	a0003	398	1	0	1	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	a0004	398	1	1	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	a0005	398	1	1	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD13_chr13_108213392_108239243	1/1	a0001	337	389	92	78	165	18	34	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	a0002	337	1	0	0	1	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD14A_chr3_51970064_51986196	1/1	a0001	271	300	61	51	133	14	39	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0002	271	31	25	1	4	0	1	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0003	271	6	1	5	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0004	271	3	0	0	3	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0005	271	1	0	0	0	0	1	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0006	271	1	0	1	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0007	271	1	0	0	0	0	1	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	a0008	271	1	1	0	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14B_chr3_51963515_51979049	1/1	a0001	210	314	79	59	120	14	40	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	a0002	16	10	9	1	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD15_chr17_29555547_29572037	0/1	a0001	468	342	80	58	159	11	33	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	1/0	a0002	468	65	11	21	10	5	17	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	a0003	468	6	1	5	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	a0004	468	2	0	0	0	2	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	a0005	468	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037