JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASDURF_chr2_189656459_189671401	0/0	a0000	0	1	0	1	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	1/1	a0001	96	336	95	69	126	10	34	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	a0002	96	2	2	0	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	a0003	96	1	1	0	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASF1A_chr6_118889152_118914171	1/1	a0001	204	400	92	70	178	14	44	copy fasta	ASF1A	chr6	118889152	118914171
ASF1B_chr19_14114512_14141589	1/1	a0001	202	333	92	70	119	14	36	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	a0002	202	1	0	0	1	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASGR1_chr17_7168431_7184370	1/1	a0001	291	440	94	82	200	18	44	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	a0002	291	1	1	0	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	a0003	291	1	1	0	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR2_chr17_7096326_7119822	1/1	a0001	306	426	99	73	189	17	46	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	a0002	306	3	0	1	2	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	a0003	306	1	0	0	0	1	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	a0004	306	1	1	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	a0005	306	1	0	0	1	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASH1L_chr1_155330268_155567803	0/1	a0001	2964	153	42	27	53	8	22	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	1/0	a0002	2964	14	13	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0003	2964	4	4	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0004	2964	3	3	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0005	2964	2	1	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0006	2964	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0007	2964	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0008	2964	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0009	2964	1	0	0	1	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0010	2964	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	a0011	2964	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH2L_chr8_38100529_38145080	1/1	a0001	628	321	78	57	150	8	26	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	a0002	628	3	3	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	a0003	628	3	0	3	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	a0004	628	2	0	0	2	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	a0005	312	1	1	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASIC1_chr12_50052596_50088611	1/1	a0001	528	322	89	66	121	12	32	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	a0002	528	1	1	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	a0003	528	1	0	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC2_chr17_33008087_33298295	1/1	a0001	563	192	67	42	57	7	17	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	a0002	563	47	7	8	20	3	9	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	a0003	563	1	0	0	1	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC3_chr7_151043531_151057754	1/1	a0001	531	394	83	68	181	17	43	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0002	529	7	0	0	7	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0003	531	3	0	0	3	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0004	531	3	0	2	0	0	1	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0005	531	2	0	0	2	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0006	531	2	0	0	2	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0007	531	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0008	531	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0009	531	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0010	531	1	0	0	0	1	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0011	531	1	0	0	1	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0012	531	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	a0013	531	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754