JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF6_chr1_12933472_12952580	0/0	a0009	476	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0010	476	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0011	476	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0012	476	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0013	476	1	0	1	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0014	476	1	1	0	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0015	476	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0016	476	1	0	0	0	0	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0017	476	1	0	1	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	a0018	476	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF7_chr1_12911610_12925751	0/0	a0001	474	123	19	18	60	6	20	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0002	474	79	9	31	28	4	7	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0003	474	12	1	4	1	0	6	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0004	474	10	10	0	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0005	474	10	0	5	5	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0006	474	9	8	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0007	474	3	0	0	0	0	3	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0008	474	2	0	2	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0009	474	2	0	2	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0010	474	1	1	0	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0011	474	1	0	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0012	474	1	0	0	1	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	a0013	474	1	0	0	1	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF8_chr1_13276304_13290137	0/0	a0001	474	188	26	45	96	10	11	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0002	474	103	14	10	56	2	21	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0003	474	14	13	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0004	474	6	6	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0005	474	5	2	1	1	0	1	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0006	474	2	2	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0007	474	2	2	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0008	474	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0009	474	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0010	474	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0011	474	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0012	474	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0013	474	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0014	474	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0015	474	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0016	474	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0017	474	1	0	0	0	0	1	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0018	474	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	a0019	74	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF9_chr1_13166848_13184459	0/0	a0001	478	82	3	29	37	4	9	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0002	478	35	1	6	26	0	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	1/0	a0003	478	22	0	3	17	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/1	a0004	478	19	2	2	11	1	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0005	478	8	2	1	2	1	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0006	478	6	1	1	4	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0007	478	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0008	478	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459