JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF9_chr1_13166848_13184459	0/0	a0009	167	2	1	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0010	478	2	0	2	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0011	478	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0012	478	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0013	478	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0014	478	2	0	2	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0015	478	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0016	478	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0017	215	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0018	155	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0019	478	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0020	478	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0021	478	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0022	478	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0023	478	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0024	478	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0025	478	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0026	478	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0027	344	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0028	478	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0029	478	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	a0030	478	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAME_chr22_22542701_22564265	0/1	a0001	509	252	49	35	123	12	32	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0002	509	116	26	26	48	3	13	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0003	509	6	0	0	1	0	5	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0004	509	6	3	2	0	1	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0005	509	4	4	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0006	509	3	3	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0007	509	3	0	0	3	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0008	509	2	0	0	2	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0009	509	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0010	509	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0011	509	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0012	509	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0013	509	1	0	1	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0014	509	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	a0015	509	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAP1_chr10_133342373_133357683	0/1	a0001	151	363	78	68	166	14	36	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	a0002	151	17	11	4	0	2	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	a0003	151	3	3	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	1/0	a0004	151	3	2	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	a0005	151	1	1	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	a0006	151	1	1	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRB2_chr12_11386540_11400567	1/0	a0001	416	182	18	30	109	2	22	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/1	a0002	416	125	4	32	68	6	14	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0003	601	34	21	1	8	1	3	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0004	477	13	0	0	13	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0005	724	11	2	1	7	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0006	416	10	8	1	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0007	151	5	1	0	4	0	0	copy fasta	PRB2	chr12	11386540	11400567