JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRB2_chr12_11386540_11400567	0/0	a0008	151	4	0	0	2	0	2	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0009	354	3	3	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0010	601	2	0	1	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0011	354	2	0	0	2	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0012	331	2	0	2	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0013	427	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0014	416	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0015	164	1	0	0	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0016	416	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0017	704	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0018	416	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0019	416	1	0	0	0	1	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0020	416	1	0	0	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0021	416	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0022	416	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0023	416	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0024	416	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0025	601	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0026	600	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0027	539	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0028	416	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	a0029	416	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB3_chr12_11260914_11274707	0/0	a0000	0	6	3	0	3	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0001	309	198	27	37	100	8	26	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0002	246	62	17	10	24	1	10	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0003	275	43	0	0	42	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0004	254	25	0	1	16	1	7	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0005	275	12	9	3	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0006	246	11	9	2	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0007	296	11	11	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0008	267	10	0	8	0	2	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0009	288	8	0	2	5	1	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0010	309	5	1	0	4	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0011	351	5	4	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0012	309	4	4	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0013	351	4	0	1	3	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0014	233	4	0	0	4	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/1	a0015	309	3	0	1	0	1	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0016	309	3	0	3	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0017	288	2	2	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0018	288	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0019	393	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0020	288	2	0	1	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0021	254	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0022	233	2	2	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0023	225	2	0	2	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0024	309	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0025	309	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0026	254	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0027	309	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707