JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRB3_chr12_11260914_11274707	0/0	a0028	393	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0029	275	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0030	275	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0031	254	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0032	351	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0033	296	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0034	212	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0035	330	1	0	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0036	173	1	0	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0037	372	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	a0038	330	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB4_chr12_11302077_11315436	0/1	a0001	268	259	40	48	136	11	23	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0002	247	92	18	12	45	2	15	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0003	310	45	9	2	24	2	8	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0004	289	18	15	3	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0005	38	16	0	13	0	1	2	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0006	268	5	3	2	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0007	252	4	0	0	4	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0008	289	4	4	0	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0009	252	3	0	0	3	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0010	247	2	0	0	0	0	2	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0011	268	1	1	0	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0012	310	1	0	0	1	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	a0013	268	1	0	0	1	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRC1_chr15_90961040_90999535	0/1	a0001	620	355	93	63	154	14	30	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	a0002	620	11	0	3	0	2	6	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	a0003	620	6	0	0	0	0	6	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	1/0	a0004	620	1	0	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	a0005	620	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	a0006	620	1	0	1	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	a0007	620	1	0	1	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRCC_chr1_156762535_156805815	1/1	a0001	491	294	92	55	101	7	37	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0002	491	48	4	20	16	3	5	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0003	491	3	0	2	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0004	491	1	0	1	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0005	491	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0006	491	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0007	491	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	a0008	491	1	0	0	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCD_chr17_76535044_76550376	1/1	a0001	54	441	96	74	206	16	47	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	a0002	54	1	0	0	0	0	1	copy fasta	PRCD	chr17	76535044	76550376
PRCP_chr11_82817936_82905430	1/1	a0001	496	272	77	52	104	6	31	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0002	496	39	9	11	12	2	5	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0003	496	3	3	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0004	496	2	0	0	0	0	2	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0005	496	1	0	0	1	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0006	496	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0007	496	1	0	1	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	a0008	496	1	0	0	1	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRDM10_chr11_129894711_130007835	0/0	a0001	1156	110	29	22	45	3	11	copy fasta	PRDM10	chr11	129894711	130007835