JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRDM10_chr11_129894711_130007835	1/0	a0002	1156	85	22	21	32	1	8	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/1	a0003	1156	75	23	2	47	0	2	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0004	1156	40	11	5	23	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0005	1156	6	6	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0006	1156	3	2	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0007	1156	2	1	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0008	1156	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0009	1156	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0010	1156	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0011	1156	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	a0012	1156	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM11_chr11_45141639_45240109	1/1	a0001	1177	290	76	48	127	8	29	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	a0002	1177	9	0	8	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	a0003	1177	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	a0004	1177	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	a0005	1177	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	a0006	1177	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM12_chr9_130659594_130687983	0/0	a0001	368	207	46	42	96	3	20	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	1/0	a0002	367	119	42	25	21	11	19	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	a0003	362	38	0	4	30	0	4	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/1	a0004	364	13	4	4	1	3	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	a0005	369	10	2	2	4	0	2	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	a0006	367	2	2	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	a0007	361	2	0	0	0	1	1	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	a0008	368	1	0	1	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM13_chr6_99601833_99620562	1/0	a0001	707	314	32	62	170	15	34	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/1	a0002	708	100	38	16	30	3	12	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0003	707	12	12	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0004	707	5	3	0	1	0	1	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0005	707	2	0	0	2	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0006	707	2	0	0	2	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0007	708	2	2	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0008	707	1	0	1	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0009	707	1	0	1	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0010	707	1	1	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0011	707	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	a0012	707	1	0	0	0	0	1	copy fasta	PRDM13	chr6	99601833	99620562
PRDM14_chr8_70046651_70076252	1/1	a0001	571	339	81	50	149	13	44	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	a0002	571	81	16	14	45	1	5	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	a0003	571	1	1	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	a0004	571	1	0	0	0	0	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM15_chr21_41793225_41884344	0/1	a0001	1141	373	94	67	150	18	43	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0002	1141	22	0	1	18	0	3	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0003	1141	2	0	0	0	0	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	1/0	a0004	1141	2	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0005	1141	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0006	1141	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0007	1141	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0008	1141	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	a0009	1141	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344