JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRDM15_chr21_41793225_41884344	0/0	a0010	1141	1	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM16_chr1_3064203_3443621	0/1	a0001	1276	167	62	30	52	4	18	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0002	1276	25	14	7	0	1	3	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	1/0	a0003	1276	9	0	7	0	1	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0004	1276	3	0	0	3	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0005	1276	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0006	1276	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0007	1276	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0008	1276	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0009	1276	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	a0010	1276	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM1_chr6_106081336_106114938	1/0	a0001	825	299	52	45	156	14	31	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/1	a0002	825	55	15	18	3	2	16	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0003	825	34	8	2	21	0	3	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0004	825	7	7	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0005	825	3	3	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0006	825	2	0	0	2	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0007	825	2	0	2	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0008	825	2	2	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0009	825	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0010	825	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0011	825	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0012	825	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0013	825	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	a0014	825	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM2_chr1_13695188_13830079	1/0	a0001	1718	125	28	27	46	10	13	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0002	1719	122	25	28	52	4	13	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/1	a0003	1719	40	19	1	19	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0004	1720	8	0	0	4	0	4	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0005	1719	7	0	3	0	1	3	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0006	1719	5	1	0	1	1	2	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0007	1718	4	0	0	0	0	4	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0008	1719	2	0	1	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0009	1719	2	0	2	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0010	1718	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0011	1719	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0012	1718	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0013	1718	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0014	1718	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0015	1719	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0016	1719	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0017	1719	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	a0018	1718	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM4_chr12_107727871_107766137	1/1	a0001	801	386	88	62	176	14	44	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	a0002	801	2	0	0	2	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	a0003	801	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	a0004	801	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM5_chr4_120686915_120927726	1/1	a0001	630	291	75	55	119	12	28	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	a0002	630	3	2	1	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	a0003	630	3	1	2	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726