JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRDM9_chr5_23502609_23533093	0/0	a0009	894	3	0	2	0	1	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0010	866	3	1	0	2	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0011	894	3	2	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0012	1034	3	3	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0013	950	2	1	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0014	894	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0015	922	2	1	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0016	922	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0017	1006	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0018	950	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0019	894	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0020	894	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0021	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0022	425	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0023	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0024	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0025	894	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0026	894	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0027	950	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0028	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0029	950	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0030	838	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0031	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0032	894	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0033	866	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0034	894	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0035	894	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0036	810	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0037	894	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0038	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0039	894	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0040	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0041	950	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0042	897	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0043	866	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0044	838	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0045	978	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0046	894	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0047	754	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0048	894	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0049	1006	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDX1_chr1_45506051_45526884	1/1	a0001	199	363	86	80	138	18	39	copy fasta	PRDX1	chr1	45506051	45526884
PRDX1_chr1_45506051_45526884	0/0	a0002	199	1	0	0	0	0	1	copy fasta	PRDX1	chr1	45506051	45526884
PRDX2_chr19_12791823_12806800	1/1	a0001	198	412	90	72	184	18	46	copy fasta	PRDX2	chr19	12791823	12806800
PRDX3_chr10_119162720_119183812	1/1	a0001	256	411	95	77	184	16	37	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	a0002	256	6	0	0	6	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	a0003	256	3	0	0	0	0	3	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	a0004	256	3	3	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	a0005	256	1	1	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	a0006	256	1	1	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812