JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRDX3_chr10_119162720_119183812	0/0	a0007	256	1	0	1	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX4_chrX_23662493_23691397	1/1	a0001	271	343	74	62	167	13	25	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	a0002	271	2	2	0	0	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	a0003	198	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	a0004	263	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	a0005	263	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	a0006	171	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX5_chr11_64313121_64326811	0/1	a0001	214	352	61	69	163	14	44	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	1/0	a0002	214	30	27	2	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	a0003	214	2	0	0	0	0	2	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	a0004	214	1	0	1	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	a0005	214	1	0	0	1	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX6_chr1_173472335_173493815	1/1	a0001	224	401	93	68	182	16	40	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	a0002	224	1	1	0	0	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PREB_chr2_27125756_27139636	1/1	a0001	417	386	88	69	175	16	36	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	a0002	417	3	3	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	a0003	417	2	1	1	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	a0004	417	1	0	0	1	0	0	copy fasta	PREB	chr2	27125756	27139636
PRELID1_chr5_177298799_177311949	1/1	a0001	219	409	100	68	179	16	44	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	a0002	219	1	0	0	1	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID2_chr5_145751344_145840342	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	1/1	a0001	177	251	83	45	91	6	24	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	a0002	177	6	5	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID3A_chr18_12402929_12437234	1/1	a0001	172	394	96	82	158	12	44	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3B_chr20_59028145_59047786	1/1	a0001	194	410	91	77	178	14	48	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	a0002	194	1	0	1	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	a0003	194	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELP_chr1_203470806_203496352	1/1	a0001	382	415	90	75	193	14	41	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0002	382	5	0	0	5	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0003	382	2	0	0	0	0	2	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0004	382	2	0	0	0	0	2	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0005	382	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0006	382	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0007	382	1	0	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0008	382	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0009	382	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	a0010	382	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PREPL_chr2_44312607_44366494	1/1	a0001	638	368	85	67	166	10	38	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0002	638	4	4	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0003	638	2	1	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0004	638	1	0	0	0	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0005	638	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0006	638	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0007	638	1	0	0	0	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0008	638	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0009	638	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0010	638	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	a0011	638	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREP_chr6_105268218_105408082	1/1	a0001	710	95	26	16	29	4	18	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	a0002	710	91	55	9	19	2	6	copy fasta	PREP	chr6	105268218	105408082