JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PREP_chr6_105268218_105408082	0/0	a0003	710	16	7	2	2	1	4	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	a0004	710	7	3	1	0	1	2	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	a0005	710	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	a0006	710	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	a0007	710	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREX1_chr20_48619252_48832999	0/0	a0001	1659	122	32	23	49	5	13	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/1	a0002	1659	45	5	10	19	3	7	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0003	1659	40	19	8	8	1	4	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0004	1659	34	0	5	22	2	5	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0005	1659	4	4	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0006	1659	3	0	1	0	1	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0007	1659	3	1	0	0	0	2	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0008	1659	3	2	1	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0009	1659	2	0	0	2	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0010	1659	2	0	0	2	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0011	1659	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0012	1659	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0013	1659	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0014	1659	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0015	1659	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0016	1659	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0017	1659	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	1/0	a0018	1659	1	0	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0019	1659	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	a0020	1659	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX2_chr8_67947046_68242032	1/1	a0001	1606	159	53	34	44	4	22	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0002	1606	11	2	0	7	0	2	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0003	1606	5	4	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0004	1606	4	4	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0005	1606	2	0	1	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0006	1606	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0007	1606	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0008	1606	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0009	1606	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0010	1606	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0011	1606	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0012	1606	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0013	1606	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	a0014	1606	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PRF1_chr10_70592348_70607741	1/1	a0001	555	418	87	74	195	16	44	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0002	555	8	8	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0003	555	4	0	2	0	2	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0004	555	2	1	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0005	555	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0006	555	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0007	555	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0008	555	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0009	555	1	0	0	0	0	1	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0010	555	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0011	555	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741