JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASIC4_chr2_219509482_219543772	0/1	a0001	539	180	24	36	82	7	30	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	1/0	a0002	539	100	24	25	42	4	4	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0003	539	57	16	17	14	3	7	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0004	539	26	26	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0005	539	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0006	539	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0007	539	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0008	539	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0009	539	1	0	0	0	0	1	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0010	539	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0011	539	1	0	1	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0012	539	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	a0013	539	1	0	1	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC5_chr4_155824729_155871277	1/1	a0001	505	325	85	67	120	14	37	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	a0002	505	6	5	1	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	a0003	505	1	0	0	0	0	1	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	a0004	505	1	1	0	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	a0005	505	1	1	0	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIP_chr20_34236423_34274344	1/1	a0001	132	303	74	46	139	10	32	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	a0002	132	3	0	0	3	0	0	copy fasta	ASIP	chr20	34236423	34274344
ASL_chr7_66070819_66098576	1/1	a0001	464	309	90	54	118	16	29	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	a0002	464	3	0	0	3	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	a0003	464	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	a0004	464	1	0	0	0	0	1	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	a0005	464	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	a0006	464	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASMTL_chrX_1398139_1457909	0/0	a0000	0	11	1	5	3	1	1	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0001	621	55	5	13	32	1	4	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	1/1	a0002	621	43	21	7	11	1	1	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0003	621	40	13	10	13	2	2	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0004	621	13	1	2	8	0	2	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0005	621	3	3	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0006	621	2	2	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0007	621	2	2	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0008	621	2	0	2	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0009	239	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0010	621	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0011	621	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0012	621	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0013	621	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0014	621	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0015	621	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0016	621	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0017	621	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0018	471	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0019	257	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0020	621	1	0	0	0	1	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0021	239	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	a0022	5	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMT_chrX_1610059_1648081	1/0	a0001	373	134	39	28	52	3	11	copy fasta	ASMT	chrX	1610059	1648081