JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRF1_chr10_70592348_70607741	0/0	a0012	555	1	0	0	0	0	1	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0013	555	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	a0014	555	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRG2_chr11_57381780_57395650	0/1	a0001	222	357	53	64	181	18	40	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	1/0	a0002	222	45	40	1	3	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	a0003	222	1	1	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	a0004	222	1	0	1	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG3_chr11_57371769_57386150	0/1	a0001	225	361	77	72	157	16	38	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	1/0	a0002	225	19	17	1	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	a0003	214	6	0	0	6	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	a0004	225	4	1	1	0	2	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	a0005	225	3	0	0	3	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	a0006	225	2	0	2	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	a0007	225	1	1	0	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG4_chr1_186291279_186319567	1/0	a0001	1404	230	35	39	123	7	25	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/1	a0002	1404	65	14	22	15	3	10	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0003	1396	52	6	5	31	3	7	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0004	1404	18	18	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0005	1404	9	0	9	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0006	1404	7	0	0	7	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0007	1404	5	5	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0008	1404	4	4	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0009	1404	3	0	0	0	1	2	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0010	1404	3	0	0	3	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0011	1404	3	0	0	3	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0012	1404	3	3	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0013	1396	3	0	3	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0014	1396	3	2	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0015	1388	2	1	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0016	1404	2	2	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0017	1404	2	0	0	0	0	2	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0018	1404	2	0	0	0	0	2	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0019	1396	2	0	0	2	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0020	1404	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0021	1404	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0022	1412	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0023	1389	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0024	1380	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0025	1335	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0026	1404	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0027	1404	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0028	1404	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	a0029	1404	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRH1_chr12_10875965_10889255	0/0	a0001	166	219	20	44	120	10	25	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	a0002	187	97	53	23	11	4	6	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/1	a0003	166	65	14	10	35	0	5	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	a0004	166	8	0	7	0	1	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	a0005	54	5	5	0	0	0	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	a0006	166	1	0	0	0	1	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	a0007	166	1	0	0	1	0	0	copy fasta	PRH1	chr12	10875965	10889255