JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRH1_chr12_10875965_10889255	0/0	a0008	166	1	0	0	1	0	0	copy fasta	PRH1	chr12	10875965	10889255
PRH2_chr12_10924236_10939845	0/0	a0001	166	276	56	61	114	14	31	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/1	a0002	166	93	24	17	38	2	11	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	a0003	166	13	9	4	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	a0004	166	3	2	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	a0005	166	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	a0006	149	1	1	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRICKLE1_chr12_42451757_42594746	1/1	a0001	831	274	73	56	102	10	31	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0002	831	11	0	2	8	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0003	831	9	0	2	7	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0004	831	2	0	0	0	0	2	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0005	831	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0006	831	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0007	831	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	a0008	831	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE2_chr3_64087236_64230466	1/1	a0001	844	337	87	62	149	14	23	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	a0002	844	1	0	0	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	a0003	844	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	a0004	844	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE3_chrX_49169802_49191373	0/0	a0000	0	1	1	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	1/1	a0001	615	267	78	51	93	11	32	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	a0002	30	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	a0003	100	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	a0004	311	1	1	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	a0005	483	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	a0006	178	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE4_chr6_41775782_41792452	0/1	a0001	385	287	65	58	121	8	34	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	1/0	a0002	384	143	27	24	72	8	11	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0003	385	5	0	0	5	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0004	385	4	0	0	4	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0005	385	3	1	2	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0006	385	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0007	384	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0008	385	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0009	384	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0010	384	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0011	323	1	0	0	0	0	1	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0012	384	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0013	385	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	a0014	385	1	1	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRIM1_chr12_56726580_56757323	1/1	a0001	420	284	72	58	101	15	36	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	a0002	420	50	17	3	27	1	2	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	a0003	420	1	0	1	0	0	0	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	a0004	420	1	1	0	0	0	0	copy fasta	PRIM1	chr12	56726580	56757323
PRIM2_chr6_57312630_57651850	1/1	a0001	509	293	78	49	129	12	23	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	a0002	509	3	2	1	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	a0003	509	2	2	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	a0004	509	1	0	0	0	0	1	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	a0005	509	1	0	0	1	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIMA1_chr14_93713298_93793485	0/1	a0001	153	396	95	68	174	14	44	copy fasta	PRIMA1	chr14	93713298	93793485