JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRIMA1_chr14_93713298_93793485	0/0	a0002	153	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMPOL_chr4_184644738_184699952	1/1	a0001	560	242	43	43	119	10	25	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0002	560	30	6	15	0	1	8	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0003	557	19	17	2	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0004	560	14	13	1	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0005	560	11	10	1	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0006	560	3	0	2	0	1	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0007	557	3	1	2	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0008	8	1	0	0	0	0	1	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0009	560	1	1	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0010	560	1	1	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0011	560	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0012	226	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	a0013	560	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRKAA1_chr5_40754389_40803374	1/1	a0001	559	402	94	80	168	16	42	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA2_chr1_56640314_56720335	1/1	a0001	552	407	96	57	195	14	43	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	a0002	552	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	a0003	552	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	a0004	552	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	a0005	552	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	a0006	552	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAB1_chr12_119663133_119686619	1/1	a0001	270	368	84	64	162	18	38	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	a0002	270	3	3	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	a0003	270	3	3	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB2_chr1_147150106_147177470	1/1	a0001	272	429	92	78	194	18	45	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	a0002	272	1	0	0	0	0	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKACA_chr19_14086688_14122762	1/1	a0001	351	358	92	70	134	14	46	copy fasta	PRKACA	chr19	14086688	14122762
PRKACB_chr1_84139271_84243498	1/1	a0001	398	319	88	68	116	16	29	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	a0002	398	1	0	0	0	0	1	copy fasta	PRKACB	chr1	84139271	84243498
PRKACG_chr9_69007504_69019113	1/1	a0001	351	332	64	67	164	13	22	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	a0002	351	142	34	21	58	5	24	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	a0003	351	1	1	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	a0004	351	1	1	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKAG1_chr12_48997274_49023776	1/1	a0001	331	311	82	46	142	11	28	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	a0002	331	3	0	2	0	1	0	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG2_chr7_151551127_151882115	1/1	a0001	569	240	68	51	76	12	31	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	a0002	569	4	0	0	2	0	2	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	a0003	569	3	0	0	3	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	a0004	569	2	2	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	a0005	569	1	0	0	0	0	1	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	a0006	569	1	0	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	a0007	569	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG3_chr2_218817308_218836803	1/1	a0001	489	285	78	44	118	13	30	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0002	489	86	3	23	56	0	4	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0003	489	14	13	1	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0004	489	8	0	4	0	1	3	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0005	489	3	3	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0006	489	1	0	0	1	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0007	489	1	0	0	1	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	a0008	489	1	1	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803