JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRKAG3_chr2_218817308_218836803	0/0	a0009	489	1	0	0	0	0	1	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAR1A_chr17_68507430_68538431	1/1	a0001	381	411	94	63	194	16	42	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	a0002	381	1	0	1	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR2A_chr3_48741586_48852874	1/1	a0001	404	164	74	24	38	14	12	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	a0002	404	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	a0003	404	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2B_chr7_107039705_107166811	1/1	a0001	418	281	76	45	110	14	34	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	a0002	418	1	0	1	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKCA_chr17_66297613_66815743	0/1	a0001	672	176	71	32	46	8	18	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	1/0	a0002	672	1	0	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	a0003	672	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCB_chr16_23830983_24225611	1/1	a0001	673	147	65	34	22	2	22	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	a0002	673	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCD_chr3_53156209_53197717	1/1	a0001	676	320	90	67	99	16	46	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	a0002	676	1	0	1	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	a0003	676	1	0	0	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCE_chr2_45646675_46192990	1/1	a0001	737	164	63	36	31	10	22	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	a0002	737	3	3	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	a0003	737	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCG_chr19_53877197_53912652	1/1	a0001	697	357	92	70	133	14	46	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	a0002	697	2	2	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	a0003	528	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	a0004	697	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	a0005	697	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCH_chr14_61316579_61555976	1/1	a0001	683	188	74	37	47	6	22	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	a0002	683	19	0	1	18	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	a0003	683	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCI_chr3_170217424_170310977	1/1	a0001	596	340	92	66	135	13	32	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	a0002	596	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	a0003	596	1	0	0	0	1	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCQ_chr10_6422148_6585276	0/0	a0001	706	167	42	37	62	9	17	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	a0002	706	79	28	13	25	1	12	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	a0003	706	3	3	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	a0004	706	1	0	0	0	0	1	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	a0005	706	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	a0006	706	1	0	0	1	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCSH_chr19_11430635_11455968	1/0	a0001	535	176	40	29	83	5	18	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/1	a0002	534	130	46	21	46	6	10	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	a0003	534	19	1	9	2	4	3	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	a0004	536	10	8	1	0	0	1	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	a0005	533	7	1	5	0	1	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	a0006	535	3	0	0	1	0	2	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	a0007	535	1	0	1	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCZ_chr1_2045411_2190395	1/1	a0001	592	284	80	53	104	10	35	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	a0002	584	1	0	0	0	0	1	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	a0003	592	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKD1_chr14_29571479_29932847	0/0	a0001	912	136	53	27	46	2	8	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	a0002	914	10	1	0	7	0	2	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	a0003	912	4	0	0	4	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	a0004	912	2	0	2	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847