JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRKN_chr6_161342417_162732766	0/0	a0003	465	3	2	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	a0004	465	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	a0005	465	1	0	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	a0006	465	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKRA_chr2_178426414_178456175	1/1	a0001	313	405	86	73	188	14	42	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	a0002	313	1	0	1	0	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRIP1_chr7_102391363_102431666	1/0	a0001	184	352	72	67	152	14	46	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/1	a0002	184	25	13	7	0	2	2	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	a0003	184	3	3	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	a0004	184	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	a0005	184	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKX_chrX_3599340_3718649	0/1	a0001	358	185	66	26	77	2	13	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	1/0	a0002	358	39	1	16	6	3	12	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	a0003	358	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	a0004	197	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	a0005	245	1	0	0	0	1	0	copy fasta	PRKX	chrX	3599340	3718649
PRLHR_chr10_118584997_118600648	0/1	a0001	370	424	82	76	206	11	48	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	1/0	a0002	370	8	7	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	a0003	370	7	0	6	0	1	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	a0004	370	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	a0005	370	2	0	0	0	0	2	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	a0006	370	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLH_chr2_237561574_237572175	1/1	a0001	87	401	93	73	174	12	47	copy fasta	PRLH	chr2	237561574	237572175
PRLH_chr2_237561574_237572175	0/0	a0002	87	1	0	0	0	0	1	copy fasta	PRLH	chr2	237561574	237572175
PRLH_chr2_237561574_237572175	0/0	a0003	87	1	1	0	0	0	0	copy fasta	PRLH	chr2	237561574	237572175
PRLH_chr2_237561574_237572175	0/0	a0004	87	1	0	1	0	0	0	copy fasta	PRLH	chr2	237561574	237572175
PRLR_chr5_35050702_35235487	1/1	a0001	622	190	76	34	59	2	17	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	a0002	622	23	10	5	3	0	5	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	a0003	622	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRL_chr6_22282246_22302036	1/1	a0001	227	440	91	77	206	14	50	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	a0002	227	3	3	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	a0003	227	1	0	1	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	a0004	227	1	1	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	a0005	227	1	1	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRM1_chr16_11275841_11286330	1/1	a0001	51	409	98	74	170	18	47	copy fasta	PRM1	chr16	11275841	11286330
PRM1_chr16_11275841_11286330	0/0	a0002	51	1	0	0	0	0	1	copy fasta	PRM1	chr16	11275841	11286330
PRM2_chr16_11270639_11281480	1/1	a0001	102	400	94	77	165	16	46	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	a0002	102	1	0	1	0	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	a0003	102	1	0	0	1	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM3_chr16_11268199_11278629	0/0	a0000	0	12	11	1	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	a0001	103	239	68	55	69	12	35	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	1/0	a0002	103	129	11	10	96	4	7	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/1	a0003	103	30	1	11	13	0	4	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	a0004	103	2	1	1	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	a0005	111	1	0	0	1	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	a0006	103	1	0	0	1	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRMT1_chr19_49672271_49693447	1/1	a0001	371	396	90	80	161	14	49	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	a0002	371	1	0	0	1	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	a0003	361	1	0	0	0	0	1	copy fasta	PRMT1	chr19	49672271	49693447
PRMT2_chr21_46630674_46670124	1/1	a0001	433	425	98	76	189	14	46	copy fasta	PRMT2	chr21	46630674	46670124