JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRMT2_chr21_46630674_46670124	0/0	a0002	447	1	0	0	1	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT3_chr11_20382716_20514338	1/1	a0001	531	335	75	60	151	14	33	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0002	531	23	23	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0003	531	13	0	0	13	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0004	531	2	0	0	2	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0005	531	1	0	1	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0006	531	1	0	0	0	0	1	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0007	531	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0008	531	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0009	531	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0010	531	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	a0011	531	1	0	1	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT5_chr14_22915529_22934376	1/1	a0001	637	364	100	74	140	12	36	copy fasta	PRMT5	chr14	22915529	22934376
PRMT6_chr1_107051674_107064294	1/1	a0001	375	334	81	60	139	15	37	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	a0002	375	54	1	6	37	3	7	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	a0003	375	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	a0004	375	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT7_chr16_68306019_68363584	1/1	a0001	692	275	85	57	92	6	33	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0002	692	3	3	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0003	692	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0004	692	1	0	1	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0005	692	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0006	692	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0007	692	1	0	0	0	0	1	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	a0008	692	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT8_chr12_3486203_3598973	1/1	a0001	394	363	89	68	154	16	34	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	a0002	394	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT9_chr4_147632785_147689163	1/1	a0001	845	182	73	21	63	5	18	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0002	845	14	0	0	14	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0003	845	9	9	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0004	845	6	1	0	5	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0005	845	4	4	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0006	845	2	0	1	0	1	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0007	845	1	0	0	1	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0008	845	1	0	0	1	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0009	358	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0010	845	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	a0011	845	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRND_chr20_4716909_4733460	1/0	a0001	176	280	41	50	158	8	22	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/1	a0002	176	191	56	32	67	10	25	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	a0003	176	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	a0004	176	2	0	2	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	a0005	176	2	0	0	2	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	a0006	176	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	a0007	176	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRNP_chr20_4681456_4706588	1/0	a0001	253	207	39	44	89	11	23	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	a0002	253	71	23	27	4	5	12	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	a0003	245	24	19	1	1	2	1	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	a0004	253	14	0	0	10	0	4	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	a0005	253	11	11	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588