JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRNP_chr20_4681456_4706588	0/0	a0006	253	2	0	0	2	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/1	a0007	245	1	0	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	a0008	253	1	0	0	1	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	a0009	243	1	0	0	1	0	0	copy fasta	PRNP	chr20	4681456	4706588
PROB1_chr5_139385592_139400104	0/1	a0001	1015	187	51	45	60	6	24	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0002	1015	82	6	8	49	4	15	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0003	1015	47	9	8	24	2	4	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	1/0	a0004	1015	14	6	0	7	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0005	1015	3	3	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0006	1015	2	0	0	2	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0007	1015	2	0	2	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0008	1015	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0009	1015	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0010	1015	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0011	1015	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0012	1015	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0013	1015	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0014	1015	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0015	1015	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0016	1015	1	0	0	0	0	1	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0017	1015	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	a0018	1015	1	0	1	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROCA1_chr17_28698197_28716888	1/1	a0001	364	310	73	67	118	8	42	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0002	364	3	0	0	3	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0003	364	2	1	1	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0004	364	1	0	0	1	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0005	364	1	1	0	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0006	364	1	0	0	0	0	1	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0007	364	1	1	0	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	a0008	364	1	0	0	0	0	1	copy fasta	PROCA1	chr17	28698197	28716888
PROCR_chr20_35167072_35182362	1/1	a0001	238	337	85	68	134	14	34	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	a0002	238	53	14	6	19	2	12	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	a0003	238	2	1	0	1	0	0	copy fasta	PROCR	chr20	35167072	35182362
PROC_chr2_127413427_127434242	1/1	a0001	461	417	98	80	181	10	46	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	a0002	461	1	0	0	1	0	0	copy fasta	PROC	chr2	127413427	127434242
PRODH2_chr19_35794988_35817845	1/1	a0001	460	339	59	67	152	12	47	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0002	460	37	29	0	8	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0003	460	32	2	4	26	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0004	460	12	1	9	0	0	2	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0005	460	3	3	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0006	460	2	2	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0007	460	1	0	0	1	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0008	460	1	0	0	1	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	a0009	460	1	0	0	0	0	1	copy fasta	PRODH2	chr19	35794988	35817845
PRODH_chr22_18907781_18941293	0/1	a0001	600	179	29	21	105	3	20	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0002	600	32	1	13	6	7	5	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0003	600	25	8	4	9	0	4	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0004	600	24	14	3	3	0	4	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0005	600	11	0	4	5	0	2	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0006	600	10	0	2	8	0	0	copy fasta	PRODH	chr22	18907781	18941293