JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRODH_chr22_18907781_18941293	0/0	a0007	600	9	4	4	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0008	600	9	0	4	3	1	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0009	600	8	8	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0010	600	8	0	0	8	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0011	600	7	1	1	0	0	5	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0012	600	6	2	0	4	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0013	600	6	1	2	2	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0014	600	6	2	1	0	2	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0015	600	6	4	0	1	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0016	600	5	0	1	0	1	3	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0017	600	4	4	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0018	600	3	1	2	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0019	600	3	0	1	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0020	600	3	3	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0021	600	3	3	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0022	600	3	0	3	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0023	600	3	1	0	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0024	600	2	0	2	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0025	600	2	0	1	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0026	600	2	0	2	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0027	600	2	0	0	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0028	600	2	0	0	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0029	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0030	600	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0031	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0032	600	1	0	0	0	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0033	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0034	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0035	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0036	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0037	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0038	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0039	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0040	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0041	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0042	600	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0043	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0044	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0045	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0046	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0047	600	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0048	600	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0049	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0050	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0051	600	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0052	600	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0053	600	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	a0054	600	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PROK1_chr1_110446149_110462358	0/0	a0001	105	232	38	37	127	11	19	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	1/1	a0002	105	210	46	36	94	5	27	copy fasta	PROK1	chr1	110446149	110462358