JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PROK1_chr1_110446149_110462358	0/0	a0003	105	10	9	1	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	a0004	105	2	2	0	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	a0005	105	1	0	0	1	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	a0006	105	1	1	0	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK2_chr3_71766655_71790148	1/1	a0001	129	437	97	72	202	14	50	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	a0002	129	1	1	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROKR1_chr2_68638579_68663251	1/1	a0001	393	351	55	70	165	14	45	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0002	393	58	41	8	5	2	2	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0003	393	22	0	3	18	0	1	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0004	393	4	0	1	3	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0005	393	4	4	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0006	273	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0007	320	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	a0008	393	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR2_chr20_5294218_5321954	1/1	a0001	384	406	89	79	176	14	46	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0002	384	5	0	0	5	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0003	384	4	3	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0004	384	2	0	0	2	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0005	384	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0006	384	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0007	384	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0008	384	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0009	384	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0010	384	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	a0011	384	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROM1_chr4_15963228_16089023	1/1	a0001	865	358	92	61	158	12	33	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0002	865	4	0	0	4	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0003	865	3	0	1	2	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0004	865	2	0	2	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0005	865	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0006	865	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0007	865	1	0	0	0	0	1	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0008	865	1	0	0	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0009	865	1	0	0	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0010	865	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	a0011	865	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM2_chr2_95269449_95296302	0/0	a0001	834	278	72	58	112	8	28	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0002	834	44	0	9	29	1	5	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	1/1	a0003	834	38	9	3	16	1	7	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0004	834	2	0	0	2	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0005	834	2	0	0	2	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0006	834	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0007	834	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0008	834	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0009	834	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0010	834	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0011	834	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0012	834	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	a0013	834	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROP1_chr5_177987235_178001242	0/0	a0001	226	356	82	52	173	12	37	copy fasta	PROP1	chr5	177987235	178001242