JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASMT_chrX_1610059_1648081	0/1	a0002	373	74	16	18	27	5	7	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0003	373	3	3	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0004	373	2	0	0	1	0	1	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0005	373	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0006	373	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0007	250	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0008	215	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0009	373	1	0	0	0	0	1	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0010	308	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0011	171	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0012	139	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0013	139	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	a0014	52	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASNSD1_chr2_189656459_189675831	0/1	a0001	643	325	89	65	124	10	36	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	1/0	a0002	643	5	4	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	a0003	643	4	3	1	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	a0004	643	3	0	0	3	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	a0005	643	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	a0006	643	1	0	0	1	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	a0007	643	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNS_chr7_97846677_97877408	0/1	a0001	561	388	87	59	193	12	36	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	1/0	a0002	561	39	2	13	15	6	2	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	a0003	561	6	6	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	a0004	561	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	a0005	561	1	1	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	a0006	561	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASPA_chr17_3470997_3508405	1/1	a0001	313	446	93	84	201	16	50	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	a0002	313	3	3	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	a0003	313	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPDH_chr19_50506603_50518913	0/1	a0001	283	243	72	54	81	9	26	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	1/0	a0002	283	86	3	23	40	4	15	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0003	283	32	7	1	23	0	1	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0004	283	6	6	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0005	283	1	0	1	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0006	283	1	0	0	0	1	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0007	283	1	1	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0008	283	1	0	1	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	a0009	283	1	1	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPG_chr14_104080700_104120582	1/0	a0001	573	153	25	45	51	11	20	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/1	a0002	573	153	54	25	53	1	19	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0003	573	51	8	8	27	4	4	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0004	573	3	2	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0005	573	1	0	0	0	0	1	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0006	573	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0007	573	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0008	573	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0009	573	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0010	573	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0011	573	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	a0012	573	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582