JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PROP1_chr5_177987235_178001242	0/1	a0002	226	66	8	28	18	2	9	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	a0003	226	10	8	2	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	1/0	a0004	226	1	0	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	a0005	226	1	0	0	1	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	a0006	196	1	0	0	1	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	a0007	226	1	0	0	1	0	0	copy fasta	PROP1	chr5	177987235	178001242
PRORP_chr14_35117552_35282622	1/1	a0001	583	284	79	60	100	11	32	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	a0002	583	22	2	10	4	1	5	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	a0003	583	4	4	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	a0004	583	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	a0005	583	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	a0006	583	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	a0007	583	1	0	0	0	0	1	copy fasta	PRORP	chr14	35117552	35282622
PROS1_chr3_93868051_93978896	1/1	a0001	676	302	90	61	107	12	30	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0002	676	3	3	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0003	676	3	0	0	0	0	3	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0004	676	1	0	1	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0005	676	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0006	676	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0007	676	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0008	676	1	0	0	0	0	1	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	a0009	676	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROSER1_chr13_39004865_39043089	1/1	a0001	944	262	55	48	119	9	29	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0002	944	92	30	13	31	4	14	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0003	944	11	10	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0004	944	3	0	2	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0005	948	3	0	0	3	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0006	944	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0007	944	1	0	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0008	944	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0009	944	1	1	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0010	944	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0011	944	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0012	944	1	0	0	0	1	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0013	944	1	0	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	a0014	944	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER2_chr10_11818356_11877277	1/1	a0001	435	281	63	55	124	12	25	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0002	435	24	18	2	0	1	3	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0003	435	15	14	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0004	435	13	0	8	0	0	5	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0005	435	7	0	4	0	3	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0006	435	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0007	435	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0008	435	1	0	0	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0009	435	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0010	435	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0011	435	1	0	0	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0012	435	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	a0013	435	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER3_chr19_35753176_35776166	1/1	a0001	724	270	53	58	107	11	39	copy fasta	PROSER3	chr19	35753176	35776166