JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PROSER3_chr19_35753176_35776166	0/0	a0002	724	57	17	11	26	1	2	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0003	724	34	7	9	10	3	5	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0004	724	28	0	0	28	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0005	710	15	8	0	7	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0006	724	3	3	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0007	86	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0008	724	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0009	724	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0010	724	2	0	0	0	0	2	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0011	724	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0012	724	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0013	724	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0014	724	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0015	724	1	0	0	0	1	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0016	724	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0017	724	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0018	724	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	a0019	724	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROX1_chr1_213982973_214046510	1/1	a0001	737	270	87	54	95	12	20	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	a0002	737	3	1	2	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	a0003	737	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX2_chr14_74848033_74881145	1/1	a0001	592	366	76	66	169	11	42	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0002	592	3	3	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0003	592	3	3	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0004	592	2	0	0	2	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0005	592	2	0	0	0	0	2	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0006	592	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0007	592	1	0	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0008	592	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0009	592	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0010	592	1	0	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0011	592	1	0	0	0	1	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0012	592	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	a0013	592	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROZ_chr13_113153648_113177386	1/1	a0001	400	365	85	70	158	15	35	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	a0002	400	9	0	8	0	1	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	a0003	400	2	0	0	0	0	2	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	a0004	400	1	0	0	0	0	1	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	a0005	400	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PRPF18_chr10_13581965_13635859	1/1	a0001	342	389	90	78	164	16	39	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	a0002	342	1	0	0	0	0	1	copy fasta	PRPF18	chr10	13581965	13635859
PRPF19_chr11_60885547_60911585	1/1	a0001	504	349	94	61	142	14	36	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	a0002	504	1	0	1	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF31_chr19_54110754_54136713	0/1	a0001	499	226	64	42	81	6	32	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	a0002	499	1	0	0	1	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF38A_chr1_52399602_52425836	1/1	a0001	312	307	98	40	131	8	28	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	a0002	312	1	0	0	1	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38B_chr1_108687310_108707928	1/1	a0001	546	351	85	67	140	14	43	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	a0002	546	5	0	1	0	2	2	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	a0003	546	3	0	3	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928