JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRPF38B_chr1_108687310_108707928	0/0	a0004	546	1	0	1	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	a0005	546	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	a0006	546	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF39_chr14_45079116_45121282	1/1	a0001	669	239	87	34	87	15	14	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	a0002	669	2	2	0	0	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	a0003	669	1	0	0	1	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	a0004	669	1	1	0	0	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	a0005	669	1	0	0	0	1	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF3_chr1_150316533_150358233	1/1	a0001	683	361	90	59	152	14	44	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	a0002	683	1	0	1	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF40A_chr2_152646732_152722461	1/1	a0001	972	370	93	74	141	16	44	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	a0002	972	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	a0003	972	1	0	0	1	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40B_chr12_49618561_49649665	1/1	a0001	892	192	84	38	50	8	10	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	a0002	892	1	1	0	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	a0003	892	1	1	0	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF4B_chr6_4016300_4069983	0/1	a0001	1007	259	60	49	104	13	32	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	1/0	a0002	1007	106	25	22	45	5	8	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	a0003	1007	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	a0004	1007	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	a0005	1007	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4_chr9_113270658_113297905	1/1	a0001	521	424	90	76	198	14	44	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	a0002	521	1	0	0	1	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	a0003	521	1	0	0	1	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF6_chr20_63976132_64038100	1/1	a0001	941	293	82	67	84	14	44	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	a0002	941	1	0	1	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF8_chr17_1645629_1689867	0/1	a0001	2335	289	94	39	105	12	38	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	a0002	2335	1	0	0	1	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	a0003	2335	1	0	1	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPH2_chr6_42691598_42727597	0/1	a0001	346	306	72	51	141	9	32	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	a0002	346	72	21	15	30	1	5	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	1/0	a0003	346	12	0	6	0	2	3	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	a0004	346	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	a0005	346	1	0	0	1	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH_chr12_49290147_49303686	1/1	a0001	470	359	88	67	140	16	46	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0002	470	9	4	1	2	1	1	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0003	470	6	0	0	4	1	1	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0004	470	2	0	0	2	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0005	470	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0006	236	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0007	470	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0008	470	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0009	470	1	1	0	0	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	a0010	470	1	1	0	0	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPS1L1_chr7_18021770_18032846	1/1	a0001	22	452	83	83	220	16	48	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	a0002	318	6	5	1	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	a0003	22	3	1	0	0	0	2	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	a0004	318	1	1	0	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1_chrX_107623510_107656026	1/1	a0001	318	244	74	38	96	11	23	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	a0002	247	1	0	0	1	0	0	copy fasta	PRPS1	chrX	107623510	107656026