JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRR14L_chr22_31676347_31755132	0/0	a0014	2151	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0015	2151	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0016	2151	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0017	2151	3	2	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0018	2151	2	0	0	2	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0019	2151	2	0	0	2	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0020	2151	2	0	0	0	0	2	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0021	2151	2	0	2	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0022	2151	2	2	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0023	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0024	2151	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0025	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0026	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0027	2151	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0028	2151	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0029	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0030	2151	1	0	0	0	1	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0031	2151	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0032	2151	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0033	2151	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0034	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0035	2151	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0036	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0037	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0038	2151	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0039	2151	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14_chr16_30645960_30661413	1/1	a0001	585	182	39	48	78	10	5	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0002	585	92	31	15	21	4	21	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0003	585	9	9	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0004	435	5	1	0	2	0	2	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0005	435	3	0	1	2	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0006	585	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0007	435	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0008	585	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0009	585	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	a0010	585	1	0	0	1	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR15L_chr17_47946967_47962883	1/1	a0001	103	398	94	80	162	18	42	copy fasta	PRR15L	chr17	47946967	47962883
PRR15_chr7_29558835_29572293	1/0	a0001	129	246	44	48	128	9	16	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/1	a0002	129	197	50	30	89	4	23	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	a0003	129	11	0	4	1	1	5	copy fasta	PRR15	chr7	29558835	29572293
PRR16_chr5_120459300_120692314	0/0	a0001	304	156	78	37	21	9	11	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	a0002	304	13	5	3	1	1	3	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	a0003	304	1	1	0	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR18_chr6_166300300_166313392	0/1	a0001	295	349	80	57	163	14	34	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	1/0	a0002	295	69	13	23	18	2	12	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	a0003	295	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	a0004	295	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	a0005	295	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	a0006	295	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR19_chr19_42297132_42315814	1/1	a0001	356	264	73	65	85	7	32	copy fasta	PRR19	chr19	42297132	42315814