JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRR19_chr19_42297132_42315814	0/0	a0002	356	11	10	1	0	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	a0003	4	1	0	0	1	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	a0004	356	1	0	0	0	1	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	a0005	356	1	1	0	0	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR20A_chr13_57135918_57148939	0/0	a0000	0	3	0	1	0	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0001	221	237	58	50	96	9	24	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0002	106	32	2	6	19	1	4	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0003	221	29	3	6	13	0	7	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0004	221	21	21	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0005	221	2	0	0	2	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0006	221	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0007	221	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0008	221	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0009	221	1	0	0	0	0	1	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0010	147	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	a0011	221	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20B_chr13_57142488_57155509	0/0	a0001	221	144	33	35	52	10	14	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0002	221	14	0	4	8	0	2	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0003	221	3	2	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0004	133	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0005	221	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0006	198	1	0	0	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0007	221	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0008	221	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0009	221	1	0	0	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	a0010	221	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20C_chr13_57149061_57162082	0/0	a0001	221	112	22	29	39	8	14	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0002	221	16	0	8	7	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0003	54	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0004	221	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0005	180	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0006	221	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0007	54	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0008	221	1	0	0	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0009	54	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0010	106	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	a0011	54	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20D_chr13_57155632_57168653	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	a0001	221	128	23	35	43	6	21	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	a0002	221	15	0	4	8	0	3	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	a0003	221	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	a0004	221	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20E_chr13_57162197_57175218	0/0	a0001	221	230	57	46	86	12	29	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0002	221	19	0	3	12	0	4	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0003	221	2	2	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0004	221	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0005	221	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0006	221	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0007	221	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0008	221	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218