JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRR20E_chr13_57162197_57175218	0/0	a0009	221	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	a0010	221	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20G_chr3_127278783_127293046	0/1	a0001	210	289	63	49	142	10	24	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	1/0	a0002	210	99	6	21	52	3	16	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0003	210	38	14	14	0	5	5	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0004	210	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0005	210	1	0	0	0	0	1	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0006	210	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0007	210	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0008	210	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	a0009	210	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR22_chr19_5777960_5789746	1/1	a0001	422	194	41	56	62	13	20	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0002	422	138	33	10	77	2	16	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0003	422	15	15	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0004	281	10	0	2	7	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0005	281	6	1	1	4	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0006	422	5	0	3	0	1	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0007	422	3	3	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0008	422	3	2	0	0	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0009	422	2	0	0	2	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0010	422	1	1	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0011	422	1	0	0	1	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0012	422	1	0	0	0	1	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0013	422	1	0	0	0	1	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0014	422	1	0	0	0	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	a0015	422	1	0	0	1	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR23A_chr3_138998962_139011268	1/1	a0001	266	376	83	79	162	16	34	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	a0002	266	7	0	3	0	0	4	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	a0003	266	1	1	0	0	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23B_chr3_139014031_139025926	1/1	a0001	265	403	87	77	181	16	40	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0002	265	2	2	0	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0003	265	2	0	0	2	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0004	265	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0005	265	1	0	1	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0006	265	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0007	265	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	a0008	265	1	1	0	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23C_chr3_139037102_139049892	1/1	a0001	262	417	90	77	200	13	35	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	a0002	262	6	0	3	0	0	3	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	a0003	262	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	a0004	146	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	a0005	262	1	0	0	0	1	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23D1_chr8_7534627_7547450	0/0	a0000	0	60	5	9	40	3	3	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	a0001	279	55	7	11	26	5	6	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	a0002	279	34	0	8	16	2	8	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	a0003	279	10	5	1	4	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	a0004	279	5	1	1	0	2	1	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	a0005	279	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	a0006	279	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D2_chr8_7773591_7786413	0/0	a0000	0	22	8	2	7	0	5	copy fasta	PRR23D2	chr8	7773591	7786413