JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRR23D2_chr8_7773591_7786413	0/0	a0001	279	44	15	5	16	1	7	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0002	279	22	1	2	17	1	1	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0003	279	12	0	3	6	0	3	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0004	279	8	0	6	0	2	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0005	279	6	3	2	1	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0006	279	3	2	0	0	1	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0007	279	1	0	0	1	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0008	279	1	0	0	0	1	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0009	279	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0010	279	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	a0011	279	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23E_chr3_127188131_127203185	1/1	a0001	242	450	91	85	212	16	44	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	a0002	242	3	2	1	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	a0003	242	1	0	0	1	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	a0004	242	1	0	0	1	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	a0005	242	1	1	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR27_chr4_70149237_70171609	1/1	a0001	219	410	87	65	201	14	41	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0002	219	11	8	0	0	0	3	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0003	219	8	0	4	0	2	2	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0004	219	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0005	219	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0006	219	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0007	219	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0008	219	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0009	219	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0010	219	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	a0011	219	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR29_chr17_63993351_64009305	1/0	a0001	189	307	72	56	133	12	33	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/1	a0002	189	97	23	21	35	6	11	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	a0003	189	1	0	1	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	a0004	189	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR30_chr2_27131848_27144410	1/1	a0001	412	318	65	66	137	17	31	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0002	412	25	0	0	25	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0003	412	17	12	5	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0004	412	6	0	0	6	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0005	412	5	4	1	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0006	412	5	5	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0007	371	2	2	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0008	412	1	0	0	1	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0009	77	1	0	0	0	1	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0010	412	1	0	0	0	0	1	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0011	412	1	0	0	1	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0012	412	1	1	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0013	412	1	1	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0014	412	1	0	1	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	a0015	412	1	0	1	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR32_chrX_126814729_126826786	1/1	a0001	298	236	48	49	98	11	28	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	a0002	298	84	22	10	51	0	1	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	a0003	298	9	9	0	0	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	a0004	298	4	1	1	0	0	2	copy fasta	PRR32	chrX	126814729	126826786