JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRR32_chrX_126814729_126826786	0/0	a0005	298	1	0	0	0	0	1	copy fasta	PRR32	chrX	126814729	126826786
PRR33_chr11_1883078_1896895	0/1	a0001	479	214	32	52	95	6	28	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0002	479	36	14	6	11	0	5	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0003	479	14	0	1	10	2	1	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0004	479	13	9	3	0	1	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	1/0	a0005	479	11	3	6	0	1	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0006	479	6	6	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0007	479	4	4	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0008	479	3	3	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0009	479	2	0	2	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0010	479	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0011	479	1	0	0	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0012	479	1	0	0	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0013	479	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	a0014	479	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR35_chr16_555394_570529	1/1	a0001	571	365	71	73	179	11	29	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0002	571	26	3	4	1	3	15	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0003	571	16	12	1	3	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0004	571	3	3	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0005	571	3	0	0	3	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0006	571	2	2	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0007	571	1	0	1	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0008	571	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0009	571	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0010	571	1	0	1	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0011	571	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0012	571	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0013	571	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0014	571	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	a0015	571	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR36_chr19_7863719_7879390	1/1	a0001	1346	109	27	14	51	5	10	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0002	1323	81	5	31	25	5	15	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0003	1323	79	13	17	28	4	17	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0004	1323	34	3	4	25	0	2	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0005	1346	30	18	9	0	0	3	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0006	1323	9	9	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0007	1323	3	3	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0008	1311	3	0	0	3	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0009	1346	3	3	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0010	1377	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0011	1358	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0012	1323	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0013	1346	2	0	1	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0014	1323	2	0	0	2	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0015	1346	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0016	1323	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0017	1346	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0018	1292	1	0	0	0	0	1	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0019	1346	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0020	1346	1	0	0	0	1	0	copy fasta	PRR36	chr19	7863719	7879390