JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRR36_chr19_7863719_7879390	0/0	a0021	1346	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0022	1346	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0023	981	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0024	981	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0025	1323	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0026	1292	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0027	1292	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0028	1323	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0029	1323	1	0	0	0	0	1	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0030	1323	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0031	1323	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0032	1335	1	0	0	0	0	1	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0033	1346	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0034	981	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0035	1323	1	0	1	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0036	1323	1	0	1	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0037	1311	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0038	1323	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	a0039	632	1	0	0	0	1	0	copy fasta	PRR36	chr19	7863719	7879390
PRR3_chr6_30552295_30568723	0/1	a0001	188	411	87	73	190	16	44	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	a0002	188	12	0	0	12	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	a0003	188	7	5	2	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	a0004	188	1	0	1	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR4_chr12_10840849_10854475	0/0	a0001	134	172	21	39	71	10	31	copy fasta	PRR4	chr12	10840849	10854475
PRR4_chr12_10840849_10854475	0/0	a0002	134	87	52	17	9	3	6	copy fasta	PRR4	chr12	10840849	10854475
PRR4_chr12_10840849_10854475	0/1	a0003	134	82	19	18	36	1	7	copy fasta	PRR4	chr12	10840849	10854475
PRR5L_chr11_36291288_36470204	0/1	a0001	368	203	36	47	88	7	24	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	1/0	a0002	368	42	32	3	6	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0003	368	12	4	6	0	1	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0004	368	3	3	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0005	368	3	3	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0006	368	3	0	1	0	1	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0007	368	3	0	0	3	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0008	368	1	0	0	0	1	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0009	368	1	0	1	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	a0010	368	1	0	0	1	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5_chr22_44697204_44742681	1/1	a0001	388	385	90	76	158	13	46	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	a0002	388	51	4	1	42	0	4	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	a0003	388	2	2	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	a0004	388	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	a0005	388	1	0	0	0	1	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	a0006	324	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	a0007	388	1	0	1	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR7_chr5_177441814_177461286	1/1	a0001	274	331	95	78	100	12	44	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	a0002	274	1	1	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR9_chr1_153212584_153224310	1/1	a0001	116	434	94	76	202	16	44	copy fasta	PRR9	chr1	153212584	153224310
PRRC1_chr5_127512640_127560085	1/1	a0001	445	326	87	61	135	12	29	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	a0002	445	6	1	4	0	0	1	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	a0003	445	4	0	0	4	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	a0004	445	2	0	0	2	0	0	copy fasta	PRRC1	chr5	127512640	127560085