JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASPHD1_chr16_29895488_29911056	1/1	a0001	390	323	77	44	151	8	41	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	a0002	391	59	10	24	12	6	7	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	a0003	390	7	0	0	7	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	a0004	390	2	0	0	2	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	a0005	390	2	0	0	0	2	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	a0006	390	1	1	0	0	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD2_chr22_26424260_26450015	1/1	a0001	369	419	86	78	202	13	38	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	a0002	369	7	0	2	0	3	2	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	a0003	365	1	0	0	1	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	a0004	369	1	0	0	1	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPH_chr8_61495556_61719592	1/0	a0001	758	249	68	58	93	4	25	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	a0002	758	3	3	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	a0003	758	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	a0004	758	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/1	a0005	758	1	0	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	a0006	758	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	a0007	758	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	a0008	758	1	0	0	0	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPM_chr1_197079127_197151669	0/1	a0001	3477	167	50	29	66	4	17	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0002	3477	58	5	15	27	0	11	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0003	3477	7	0	0	7	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0004	3477	7	7	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0005	3477	4	4	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0006	3477	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0007	3477	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0008	3477	3	0	0	3	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0009	3477	3	0	2	0	1	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	1/0	a0010	3477	3	0	2	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0011	3477	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0012	3477	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0013	3477	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0014	3477	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0015	3477	2	0	0	0	1	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0016	3477	2	0	0	0	1	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0017	3477	2	0	0	0	0	2	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0018	3477	2	0	0	2	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0019	3477	2	0	0	2	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0020	3477	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0021	3477	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0022	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0023	3477	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0024	3477	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0025	3477	1	0	0	0	1	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0026	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0027	3477	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0028	3477	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0029	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0030	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0031	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0032	3477	1	0	1	0	0	0	copy fasta	ASPM	chr1	197079127	197151669