JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRRC1_chr5_127512640_127560085	0/0	a0005	445	1	0	0	1	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	a0006	226	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC2A_chr6_31615715_31642771	0/1	a0001	2157	111	2	26	58	7	17	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0002	2153	58	5	17	32	1	3	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0003	2157	46	23	13	4	2	4	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0004	2157	43	20	8	5	4	6	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0005	2157	25	1	4	13	1	6	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0006	2157	23	11	4	7	1	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0007	2157	19	11	2	6	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0008	2157	19	5	1	12	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0009	2157	16	0	0	16	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0010	2157	11	0	0	11	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0011	2157	8	1	3	1	1	2	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0012	2157	7	0	0	7	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0013	2157	4	1	0	3	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0014	2157	4	4	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0015	2157	3	0	0	3	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0016	2157	3	1	1	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0017	2157	2	2	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0018	2153	2	0	0	2	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0019	2153	2	1	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0020	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0021	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0022	2157	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0023	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0024	2157	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0025	2157	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0026	2157	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0027	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0028	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0029	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0030	2157	1	0	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0031	2157	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0032	2157	1	0	0	0	1	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0033	2157	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0034	2157	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0035	2157	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0036	2157	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0037	2157	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0038	2157	1	0	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0039	2157	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	a0040	2153	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2B_chr9_131389086_131505193	0/1	a0001	2229	77	14	20	24	8	10	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0002	2229	51	27	7	12	3	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0003	2229	28	12	9	4	1	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0004	2229	19	6	6	0	5	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0005	2229	14	5	5	3	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	1/0	a0006	2229	4	3	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0007	2229	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0008	2229	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193