JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRRC2B_chr9_131389086_131505193	0/0	a0009	2229	2	0	2	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0010	2229	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0011	2229	2	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0012	2229	1	0	0	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0013	2229	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0014	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0015	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0016	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0017	2229	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0018	2229	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0019	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0020	2229	1	0	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0021	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0022	2229	1	0	0	0	1	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0023	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	a0024	2229	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2C_chr1_171480530_171598511	0/0	a0001	2898	151	38	28	58	10	17	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	1/1	a0002	2898	60	18	15	16	3	6	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0003	2898	59	6	10	33	0	10	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0004	2898	43	7	11	22	2	1	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0005	2898	4	0	2	0	0	2	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0006	2898	2	0	2	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0007	2898	2	0	1	0	1	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0008	2898	2	0	2	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0009	2898	2	2	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0010	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0011	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0012	2898	1	0	1	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0013	2898	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0014	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0015	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0016	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0017	2898	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0018	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0019	2898	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	a0020	2898	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRG1_chrX_37344364_37462291	1/1	a0001	218	213	71	29	80	7	24	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	a0002	218	1	0	0	0	0	1	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	a0003	136	1	0	0	0	0	1	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	a0004	218	1	1	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG2_chr19_49576316_49596004	1/0	a0001	202	197	42	40	86	8	20	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/1	a0002	202	120	47	19	37	4	12	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	a0003	204	18	7	5	0	0	6	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	a0004	202	9	1	4	0	2	2	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	a0005	202	1	0	0	1	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	a0006	202	1	1	0	0	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG3_chrX_151690458_151710924	0/1	a0001	231	303	58	56	145	13	30	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	1/0	a0002	231	20	14	4	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0003	231	3	3	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0004	231	3	3	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924