JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRRG3_chrX_151690458_151710924	0/0	a0005	205	2	0	2	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0006	231	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0007	231	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0008	140	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0009	231	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	a0010	231	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG4_chr11_32824927_32863120	1/1	a0001	226	369	87	72	165	10	33	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	a0002	226	15	6	3	0	3	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	a0003	226	12	2	3	3	1	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	a0004	226	3	0	0	0	0	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	a0005	226	2	2	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	a0006	226	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRT1B_chr9_131540523_131564815	1/1	a0001	263	319	37	57	173	12	38	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0002	263	77	37	13	21	3	3	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0003	263	19	1	0	18	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0004	263	16	2	4	1	2	7	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0005	268	11	10	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0006	268	3	3	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0007	263	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0008	263	2	1	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0009	263	1	0	0	0	1	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0010	263	1	0	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0011	263	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0012	263	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0013	263	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0014	186	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0015	263	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0016	263	1	0	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	a0017	263	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1_chr6_32143363_32156939	0/1	a0001	306	419	93	82	181	18	44	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	a0002	306	1	1	0	0	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	a0003	306	1	0	0	1	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT2_chr16_29807193_29820881	1/1	a0001	340	271	76	45	113	15	20	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0002	340	26	0	2	24	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0003	223	17	1	4	5	0	7	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0004	223	3	0	0	2	0	1	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0005	340	2	0	0	2	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0006	340	1	0	0	0	1	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0007	340	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	a0008	340	1	0	1	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT3_chr3_9940542_9957408	0/1	a0001	981	168	12	35	94	7	19	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0002	981	150	60	34	40	3	13	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	1/0	a0003	981	19	0	3	8	2	5	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0004	981	18	17	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0005	981	10	1	2	6	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0006	981	6	0	0	6	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0007	981	4	4	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0008	981	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0009	981	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	a0010	981	1	0	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408