JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRRT4_chr7_128345325_128366690	1/1	a0001	899	246	62	28	132	5	17	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0002	899	127	12	42	48	9	16	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0003	899	42	2	9	22	4	5	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0004	899	13	9	0	4	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0005	899	4	1	1	1	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0006	899	3	2	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0007	899	2	0	0	2	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0008	899	2	2	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0009	899	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0010	899	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0011	899	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0012	899	1	0	0	0	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0013	899	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0014	899	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0015	899	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0016	899	1	0	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	a0017	899	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRX1_chr1_170659131_170744421	1/1	a0001	245	351	79	68	158	10	34	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	a0002	245	3	3	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	a0003	245	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	a0004	245	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX2_chr9_129660647_129727674	1/1	a0001	253	358	90	66	140	18	42	copy fasta	PRRX2	chr9	129660647	129727674
PRSS12_chr4_118275038_118358003	1/1	a0001	875	162	46	10	93	0	11	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0002	875	143	20	40	61	7	15	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0003	875	41	7	4	16	2	12	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0004	875	4	1	3	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0005	875	3	2	1	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0006	875	2	2	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0007	875	2	0	2	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0008	875	2	0	0	0	0	2	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0009	875	2	2	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0010	875	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0011	875	1	0	0	0	1	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	a0012	875	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS16_chr6_27242701_27261620	1/0	a0001	514	313	73	57	136	12	34	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	a0002	509	33	10	14	3	1	5	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/1	a0003	514	23	13	2	3	1	3	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	a0004	280	1	0	1	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS1_chr7_142744472_142758072	0/1	a0001	247	361	96	68	146	12	38	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	a0002	247	2	0	0	2	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	a0003	247	2	0	0	2	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS21_chr16_2812237_2826719	1/1	a0001	314	390	97	74	165	16	36	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0002	314	30	0	4	26	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0003	314	2	2	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0004	318	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0005	314	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0006	314	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0007	314	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0008	314	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0009	310	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719