JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRSS21_chr16_2812237_2826719	0/0	a0010	310	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	a0011	314	1	1	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS22_chr16_2847730_2863170	1/1	a0001	317	410	99	84	177	16	32	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	a0002	317	1	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	a0003	317	1	1	0	0	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS23_chr11_86795542_86816233	1/1	a0001	383	351	79	60	153	16	41	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	a0002	383	1	0	0	0	0	1	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	a0003	383	1	1	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	a0004	383	1	0	0	1	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS27_chr16_2707422_2725224	1/1	a0001	290	346	69	73	142	18	42	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0002	290	24	23	1	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0003	290	4	4	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0004	290	2	2	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0005	290	2	0	0	2	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0006	290	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0007	290	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0008	290	1	0	0	1	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	a0009	290	1	0	0	1	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS2_chr7_142765970_142779560	0/1	a0001	247	335	89	64	143	8	30	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0002	247	11	1	6	1	1	2	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0003	247	8	0	2	4	1	1	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0004	247	6	5	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0005	247	2	2	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0006	247	1	0	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0007	247	1	0	0	1	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0008	247	1	0	0	1	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0009	247	1	0	0	0	0	1	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0010	247	1	0	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0011	247	1	1	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	a0012	247	1	0	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS33_chr16_2778953_2792560	1/1	a0001	280	334	61	68	150	16	37	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	a0002	280	51	39	6	3	0	3	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	a0003	280	1	0	0	1	0	0	copy fasta	PRSS33	chr16	2778953	2792560
PRSS35_chr6_83507534_83530704	0/1	a0001	413	430	91	82	199	14	43	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	1/0	a0002	413	5	0	1	0	2	1	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	a0003	413	2	2	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	a0004	413	1	0	0	1	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	a0005	413	1	0	1	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	a0006	413	1	1	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS36_chr16_31133926_31155066	1/0	a0001	855	310	79	78	107	12	33	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0002	855	6	5	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/1	a0003	855	3	0	0	0	2	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0004	855	3	3	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0005	855	1	0	0	0	0	1	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0006	855	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0007	855	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0008	855	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0009	855	1	0	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0010	855	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	a0011	855	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066