JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRSS50_chr3_46707117_46722869	0/0	a0004	385	4	3	1	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0005	385	4	4	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0006	385	2	2	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0007	385	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0008	385	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0009	385	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0010	385	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0011	385	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0012	385	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0013	385	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0014	385	1	0	0	0	1	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS53_chr16_31078437_31093943	0/0	a0001	553	111	49	26	23	7	6	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	1/1	a0002	553	95	27	27	23	9	7	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	a0003	553	87	2	15	69	0	1	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	a0004	553	20	0	0	0	0	20	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	a0005	553	3	0	0	3	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	a0006	541	1	0	0	1	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	a0007	553	1	0	0	1	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS54_chr16_58274997_58300025	0/0	a0001	395	192	63	24	76	10	19	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	1/1	a0002	395	171	14	30	105	6	14	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	a0003	395	44	7	11	20	2	4	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	a0004	395	2	0	1	0	0	1	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	a0005	395	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	a0006	395	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	a0007	395	1	0	0	1	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS55_chr8_10520532_10543819	0/0	a0001	352	146	17	20	88	2	19	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0002	352	138	31	23	63	6	15	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0003	352	97	3	21	64	2	7	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/1	a0004	352	31	17	11	0	2	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	1/0	a0005	352	27	25	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0006	352	12	0	1	10	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0007	352	8	0	3	1	2	2	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0008	352	3	3	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0009	352	2	0	0	0	0	2	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0010	352	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0011	352	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0012	352	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0013	352	2	2	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0014	352	1	0	1	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0015	352	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0016	352	1	0	1	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0017	352	1	0	1	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0018	352	1	0	0	0	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0019	352	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0020	352	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	a0021	352	1	0	0	0	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS56_chr2_232515388_232530716	0/1	a0001	603	303	38	44	179	12	29	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	1/0	a0002	603	113	55	20	18	4	15	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0003	603	7	0	0	7	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0004	603	5	1	1	0	0	3	copy fasta	PRSS56	chr2	232515388	232530716