JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRUNE1_chr1_151003449_151040713	0/0	a0006	453	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	a0007	453	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE2_chr9_76606376_76911114	0/0	a0001	3087	51	12	15	9	2	13	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0002	3083	39	5	6	23	0	5	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	1/0	a0003	3088	34	8	14	1	2	8	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0004	3087	25	1	2	20	0	2	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0005	3083	17	11	1	4	1	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0006	3087	11	5	0	6	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0007	3086	7	7	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/1	a0008	3087	6	0	4	0	1	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0009	3083	4	4	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0010	3087	3	0	0	3	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0011	3087	3	3	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0012	3088	3	3	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0013	3087	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0014	3087	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0015	3084	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0016	3083	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0017	3083	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0018	3088	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0019	3087	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0020	3087	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0021	3088	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0022	3088	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0023	3083	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0024	3083	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0025	3087	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0026	3087	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0027	3087	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0028	3087	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0029	3087	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0030	3086	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0031	3086	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0032	3087	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0033	3087	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0034	3087	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0035	3087	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0036	3087	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0037	3088	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0038	3088	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0039	3088	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0040	3088	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0041	3088	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0042	3087	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	a0043	3083	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRXL2A_chr10_80403551_80442115	1/1	a0001	229	297	91	72	82	12	38	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	a0002	229	3	3	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2B_chr1_2581777_2596468	0/1	a0001	198	412	98	72	183	14	44	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	a0002	198	1	0	0	1	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2C_chr9_96634577_96660317	1/1	a0001	226	241	47	59	89	14	30	copy fasta	PRXL2C	chr9	96634577	96660317