JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRXL2C_chr9_96634577_96660317	0/0	a0002	226	32	29	3	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	a0003	226	16	14	2	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	a0004	226	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRX_chr19_40388768_40418378	0/0	a0001	1461	113	15	29	48	9	12	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0002	1461	50	34	4	5	3	4	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/1	a0003	1461	50	15	12	19	2	1	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0004	1461	23	2	8	1	3	9	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0005	1461	12	0	0	6	0	6	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0006	1461	10	9	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0007	1460	6	0	6	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	1/0	a0008	1461	5	1	2	0	1	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0009	1460	4	4	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0010	1461	3	3	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0011	1461	3	0	0	0	0	3	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0012	1461	3	3	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0013	1461	2	0	0	2	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0014	1461	2	2	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0015	1461	2	2	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0016	1461	2	0	0	2	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0017	1461	2	2	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0018	1461	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0019	1461	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0020	1461	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0021	1461	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0022	1461	1	0	0	0	0	1	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0023	1461	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0024	1461	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0025	1461	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0026	1461	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0027	1460	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0028	1461	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0029	1456	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0030	1461	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	a0031	1461	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRY2_chrY_22066756_22101007	0/0	a0001	147	4	0	0	4	0	0	copy fasta	PRY2	chrY	22066756	22101007
PRY_chrY_22485397_22519637	0/0	a0001	147	119	15	19	65	5	15	copy fasta	PRY	chrY	22485397	22519637
PSAPL1_chr4_7425285_7439930	1/1	a0001	521	274	50	48	135	8	31	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0002	521	80	12	20	36	3	9	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0003	521	24	1	8	8	3	4	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0004	521	24	0	4	20	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0005	521	21	19	2	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0006	521	7	0	1	0	3	3	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0007	521	7	7	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0008	521	3	0	0	3	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0009	521	2	0	1	0	1	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0010	521	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0011	521	2	0	0	2	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0012	521	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0013	521	1	0	0	0	0	1	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0014	521	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930