JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASPM_chr1_197079127_197151669	0/0	a0033	3477	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0034	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0035	3477	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	a0036	3477	1	0	1	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPRV1_chr2_69955089_69966631	1/1	a0001	259	460	93	82	219	14	50	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	a0002	259	1	1	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	a0003	259	1	1	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	a0004	259	1	0	0	1	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	a0005	259	1	1	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPSCR1_chr17_81972629_82022406	1/1	a0001	553	207	47	31	91	8	28	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0002	553	131	28	34	49	8	12	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0003	553	7	7	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0004	553	6	4	2	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0005	342	5	4	0	1	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0006	553	4	0	2	2	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0007	342	2	0	0	2	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0008	553	1	1	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0009	553	1	1	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0010	553	1	0	1	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	a0011	553	1	0	0	1	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASRGL1_chr11_62332448_62398412	1/1	a0001	308	366	89	66	166	16	27	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	a0002	308	2	2	0	0	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	a0003	308	1	0	0	0	0	1	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	a0004	308	1	1	0	0	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASS1_chr9_130439961_130506274	1/1	a0001	412	357	87	70	142	18	38	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0002	412	6	5	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0003	412	3	2	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0004	412	2	1	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0005	412	2	0	2	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0006	412	1	0	0	1	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0007	412	1	0	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0008	412	1	1	0	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	a0009	412	1	0	0	1	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASTE1_chr3_131008875_131031825	1/1	a0001	679	387	88	61	183	14	39	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0002	679	8	0	0	7	0	1	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0003	679	2	2	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0004	679	1	0	0	1	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0005	679	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0006	679	1	0	1	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0007	679	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0008	679	1	0	0	1	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0009	679	1	0	1	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	a0010	679	1	0	1	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTL_chr2_96117818_96143502	0/0	a0000	0	10	10	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	a0001	431	209	63	29	89	2	26	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	a0002	431	154	15	40	86	4	9	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	1/1	a0003	431	10	1	3	0	4	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	a0004	431	8	3	1	3	0	1	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	a0005	431	2	1	1	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	a0006	431	1	0	0	0	0	1	copy fasta	ASTL	chr2	96117818	96143502