JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSAPL1_chr4_7425285_7439930	0/0	a0015	521	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0016	521	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0017	521	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0018	521	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0019	521	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	a0020	521	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAP_chr10_71811298_71856251	1/1	a0001	524	419	91	71	199	14	42	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	a0002	524	5	5	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	a0003	524	3	3	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	a0004	524	1	0	1	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	a0005	524	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	a0006	524	1	0	0	1	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAT1_chr9_78292125_78335093	1/1	a0001	370	412	95	74	181	16	44	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	a0002	370	1	0	0	1	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	a0003	370	1	0	0	0	0	1	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	a0004	370	1	0	0	0	0	1	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	a0005	370	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSCA_chr8_142675495_142687725	1/1	a0001	114	402	83	66	194	15	42	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	a0002	114	25	0	1	22	0	2	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	a0003	108	2	0	1	0	1	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	a0004	114	2	2	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	a0005	114	1	1	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSD2_chr5_139790808_139849466	1/1	a0001	771	248	61	42	99	12	32	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0002	771	13	12	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0003	771	5	5	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0004	771	1	0	0	1	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0005	771	1	0	0	0	0	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0006	771	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0007	771	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0008	771	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0009	771	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0010	771	1	0	0	0	0	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0011	771	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0012	771	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	a0013	771	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD3_chr8_18522303_19018703	0/0	a0001	1047	120	53	14	37	2	14	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0002	1047	54	13	8	27	0	6	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	1/0	a0003	1047	27	4	11	2	4	5	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/1	a0004	1047	17	7	3	0	0	6	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0005	1047	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0006	1047	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0007	1047	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0008	1047	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0009	1047	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0010	1047	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0011	1047	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	a0012	1047	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD4_chr2_113168971_113214391	1/0	a0001	1056	167	43	38	55	10	20	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/1	a0002	1056	163	24	20	86	6	26	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0003	1056	14	14	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391