JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSD4_chr2_113168971_113214391	0/0	a0004	1056	9	0	8	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0005	1056	6	0	0	6	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0006	1056	6	6	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0007	1056	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0008	1056	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0009	1056	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0010	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0011	1056	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0012	1056	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0013	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0014	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0015	1056	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0016	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0017	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0018	1056	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0019	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	a0020	1056	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD_chr10_102397619_102423785	1/1	a0001	1024	365	82	66	167	11	37	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0002	1024	9	1	4	0	1	3	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0003	1024	6	6	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0004	1024	2	2	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0005	1024	1	1	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0006	1024	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0007	1024	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0008	1029	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0009	1024	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	a0010	1024	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSEN1_chr14_73131507_73228691	1/1	a0001	467	376	87	74	167	10	36	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	a0002	467	1	0	0	1	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	a0003	467	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN2_chr1_226865616_226901098	1/1	a0001	448	410	88	70	192	18	40	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	a0002	448	2	1	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	a0003	448	2	0	0	2	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	a0004	448	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	a0005	448	1	0	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSENEN_chr19_35740651_35752519	1/1	a0001	101	412	94	72	190	14	40	copy fasta	PSENEN	chr19	35740651	35752519
PSG11_chr19_43002656_43031469	0/0	a0001	335	198	49	28	93	11	17	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0002	335	78	4	11	59	0	4	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/1	a0003	335	45	12	15	1	4	12	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	1/0	a0004	335	36	3	18	1	3	10	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0005	335	21	3	1	15	0	2	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0006	335	13	13	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0007	335	2	2	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0008	335	1	0	0	0	0	1	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0009	335	1	0	1	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0010	335	1	0	0	1	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0011	335	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0012	335	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0013	335	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	a0014	335	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469