JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSG1_chr19_42861464_42884713	1/1	a0001	419	184	38	38	87	5	14	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0002	419	128	23	13	72	3	17	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0003	419	30	5	13	3	2	7	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0004	287	11	0	3	5	2	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0005	419	7	0	0	7	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0006	287	6	0	4	0	2	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0007	419	5	5	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0008	419	5	0	2	0	0	3	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0009	419	4	4	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0010	419	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0011	419	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0012	419	3	2	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0013	419	2	2	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0014	419	2	0	0	2	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0015	419	2	0	0	2	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0016	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0017	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0018	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0019	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0020	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0021	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0022	419	1	0	0	0	0	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0023	287	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0024	419	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0025	419	1	0	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0026	419	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0027	419	1	0	0	0	0	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	a0028	419	1	0	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG2_chr19_43059209_43087701	1/1	a0001	335	263	31	50	150	6	24	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0002	335	93	43	15	23	5	7	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0003	335	29	4	15	0	3	7	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0004	335	13	1	1	10	0	1	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0005	335	5	0	0	5	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0006	335	3	3	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0007	335	3	2	1	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0008	335	2	0	0	0	0	2	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0009	335	2	2	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0010	335	2	0	2	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0011	335	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0012	335	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0013	335	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0014	335	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0015	335	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0016	335	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0017	335	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0018	335	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	a0019	335	1	0	0	0	0	1	copy fasta	PSG2	chr19	43059209	43087701
PSG3_chr19_42716642_42745481	0/0	a0001	428	140	22	35	52	10	21	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	1/1	a0002	428	122	8	25	63	3	21	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0003	428	39	33	1	2	0	3	copy fasta	PSG3	chr19	42716642	42745481