JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSG3_chr19_42716642_42745481	0/0	a0004	428	24	23	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0005	428	21	0	11	5	2	3	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0006	428	5	3	2	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0007	428	3	1	2	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0008	428	3	1	1	0	1	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0009	267	2	1	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0010	428	2	2	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0011	428	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0012	428	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0013	428	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0014	428	1	0	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0015	428	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0016	428	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	a0017	428	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG4_chr19_43187702_43210638	0/1	a0001	419	124	20	21	51	6	25	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0002	419	38	11	5	19	1	2	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0003	419	35	8	11	6	1	9	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0004	419	23	1	18	0	1	3	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0005	419	13	4	5	0	3	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0006	419	11	0	0	10	0	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0007	419	10	0	1	9	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0008	419	10	6	0	1	0	3	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0009	419	5	5	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0010	419	4	4	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0011	419	3	0	0	3	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	1/0	a0012	419	3	0	2	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0013	2	3	1	1	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0014	419	2	2	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0015	419	2	0	0	2	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0016	419	2	2	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0017	419	2	2	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0018	419	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0019	419	1	0	0	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0020	419	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0021	419	1	0	0	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0022	419	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0023	419	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0024	419	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0025	419	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0026	419	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	a0027	419	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG5_chr19_43162743_43191536	0/0	a0001	335	179	17	19	116	6	21	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/1	a0002	335	127	28	12	73	4	9	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	1/0	a0003	335	63	10	35	3	2	12	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0004	335	14	7	4	0	2	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0005	335	12	9	0	2	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0006	335	6	0	0	6	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0007	335	5	5	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0008	335	5	5	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0009	335	3	3	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536